PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084902.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 676aa    MW: 73512.6 Da    PI: 6.7665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH216e-07269289526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f + G C  Gd C +aHg
  XP_011084902.1 269 PCPEFKK-GSCAKGDACEYAHG 289
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.79E-1530152IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.3E-1736194IPR020683Ankyrin repeat-containing domain
PfamPF127963.1E-973144IPR020683Ankyrin repeat-containing domain
SMARTSM002480.05777107IPR002110Ankyrin repeat
PROSITE profilePS5029714.6977152IPR020683Ankyrin repeat-containing domain
CDDcd002044.43E-1379203No hitNo description
SMARTSM002480.0011112144IPR002110Ankyrin repeat
PROSITE profilePS5008811.327112147IPR002110Ankyrin repeat
SMARTSM003569.1E-4264290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4268290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.605269291IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-5269289IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.15299323IPR000571Zinc finger, CCCH-type
SMARTSM0035625299322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MCGGSKSKLS PFDLKMEAGL QEEKEVILHK NCSKLLELAA TDDLAGFICE VEERGCDVDE  60
VSFWYGRSFG SRKMGFEERT PVMIASQYGS TEILKYIVGT GKVDVNRACG SDGATALHCA  120
AAGGSWSSVE VVKLLIDASA DHNLLDVNGK KPGDLIAPCV KSSSNSKRRT LEMLLNGISV  180
VEACDQEEEE GKTPRAVKDG SEKKEYPVDV SLPDINNGIY GTDEFRMYSF KVKPCSRAYS  240
HDWTECPFVH PGENARRRDP RKYHYTCVPC PEFKKGSCAK GDACEYAHGV FESWLHPAQY  300
RTRLCKDETG CSRKVCFFAH KPEELRPLYA STGSAMPSPK SVSVNSLDLT TLSPLSLGSS  360
SLMLPNSSTP PMSPSVSCSS PMGGSMWQNK INLTPPTLQL PGSRLKSTLS ARDMELDMEL  420
LGLEKIRTQQ RQQLVEEMAS LSSPYSRIGD LKPTNLDDVF GSLDPTLLSQ LQGLSPKVNT  480
TSSSHLQSPT GLQIRQNMNQ LRASYPSNVS SSPSRKPSAY GFDSSAAVAA AVMNSRSSAF  540
TKRSQSFIDR SGVGYRSSLS GSANSPSLMP SKLSEWSSPD GKLDWGFNGE EVNKLRKSAS  600
FGFRSGNTNT PSAMAASNID EPDVSWVNSL VKDVPAGGTS AGAYGGDQRQ RQGGVHDAMQ  660
QHWLDQMYIE QEQIVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084902.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A068V0110.0A0A068V011_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000698870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein